11. Running Software with a GUI


Running R Software with a Graphical Interface

An X server is used to manage graphical display and GUI’s. Make sure you have X server installed on your local computer first:

  • For Mac OS, you need to have XQuartz installed first. XQuartz usually requires restarting your computer before you can use it.

  • For Windows, you need to have MobaXterm installed first.

To run a Graphical User Interface (GUI) such as RStudio, MATLAB IDE, and SAS, we need to logout (type exit or logout) and log back in to the Yens with X forwarding. Once you logged out of the Yens, login with:

$ ssh -Y <SUNetID>@yen.stanford.edu

When prompted, type your SUNet ID password. Then, complete the two-factor authentication process. After you successfully login, check that X-forwarding works correctly. Choose any of the following commands and type it in the yen command line interface as all of them will pop up a window if everything is working correctly - xeyes, xcalc, xlogo or xclock (or choose your favorite X11 command line program).

$ xeyes

which will pop up a window with eyes tracking where your mouse is.

R / RStudio GUI

To run RStudio GUI, load the R module with the version of R that you want:

$ ml R

List the loaded modules:

$ ml 
Currently Loaded Modules:
  1) rstudio/2022.07.2+576   2) R/4.2.1

We see that RStudio is loaded automatically when you load R module. We can now launch RStudio with:

$ rstudio

The RStudio GUI will pop open and you can do anything you would normally do in RStudio (but with noticeable delay due to X tunneling):

If you forget to load R module or loaded only the rstudio module, you will see an error that R is not found:

If that happens, just load R module and start RStudio again.